ECCB 2010 NEXT-GEN SEQUENCING TUTORIAL PDF

Visualizing the next generation of sequencing data with GenomeView .. .. A .. Why inverse proteins are relatively abundant, J.-C. Nebel and C. Walawage, Protein & Peptide Letters, 17(7), Michal Nánási ([email protected] ) Website: (free download, tutorials, manual, . Next generation sequencing presents new challenges in large scale data at the European Conference of Computational Biology (ECCB) , Ghent. Tutorials, workshops and seminars To do bioinformatics well, you need to learn 3 things. ECCB Next-gen sequencing Tutorial (Thomas [email protected]).

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This workshop will teach the participants how to use a series of protein structure validation tools and how to interpret the results.

Next generation sequencing

The 14 workshops preceding the ECCB main meeting were selected out of a total of 29 applications, showing how popular ECCB has become as a venue for dissemination of computational biology research.

Related articles in Web of Science Google Scholar. The ECCB edition features keynote lectures by distinguished speakers. We thank all those who provided financial support to the conference. Thanks to our academic and commercial sponsors and to the careful control of conference costs, we could satisfy about two-thirds of sequdncing requests.

The Application Track is an initiative to promote application of computational biology in industry and other fields beyond academia. Friday, 01 April We dequencing the authors for incorporating these suggestions as they were given little time to carry out minor revisions.

Consequently, submissions relating to pure research were deemed out of scope. In the light of these developments, this tutorial will focus ecch bioinformatics methods to predict cis-regulatory elements and to aid the process of regulatory annotation.

Linking sequence patterns and functionality of alpha-helical antimicrobial sequencong. Within each theme, the theme co-chairs assigned papers to expert referees, taking care to avoid any conflict of interest. The annotation of the non-coding genome with gene regulatory function is lagging far behind the annotation of protein-coding genes and improved annotation will depend both on deeper biological insight into cis-regulatory logic and on more efficient computational prediction algorithms.

It is worth noting that many authors expressed their gratitude to the reviewers next-geen their comments and suggestions.

Presenters

We hope that authors of rejected sequehcing will benefit from these remarks in their future research. Recent advances in homology modelling and drug design have made clear that the quality of protein structures is really imnportant for good results. The type and volume of the data produced by next-generation sequencing machines presents many previously unseen informatics challenges.

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We also thank, as our further supporting sponsors, Gemeentemuseum Den Haag, where also the opening reception will be held, the Municipality of The Hague, Bayer sponsoring the morning run and The Utrecht Bioinformatics Centre sponsoring the Poster Award. The ECCB conferences are gathering about a thousand scientists and industry staff working at the intersection of a broad range of disciplines including computer science, mathematics, biology and medicine.

Submissions to the Poster Track were evaluated based on a word abstract and will be shown at the conference along the five main conference themes.

Use of semantic web resources in computational biology and bioinformatics Tutorial 3: Participants will be provided with an overview of existing resources databases, tools and methods for detecting cis-regulatory elements in genome sequences, and generate testable hypotheses about the binding specificity of transcription factors motifs discoverytheir precise binding locations binding site predictionand their target genes target identificationand go towards regulatory networks.

Submissions to this track should cross the boundaries of traditional academic science, or show developments that are directly relevant beyond academia or have potential for it.

Current methods and applications for regulatory sequence analysis Tutorial 4: A dedicated Education Poster Track was created to devote in-depth attention to education that is so crucial for the next generation of bioinformaticians.

ECCB The 15th European Conference on Computational Biology | Bioinformatics | Oxford Academic

Working with next-generation sequencing data – A short primer on QC, alignment, and variation analysis of next-generation sequencing data Presenters Thomas Keane completed his PhD degree in the area of distributed computing and high-throughput phylogenomics from NUI Maynooth Ireland in He will start an assistant-professorship at the University of Leuven in October.

The type and volume of the data produced by next-generation sequencing machines presents many previously unseen informatics challenges. All original research papers that had been published in peer-review journals between 1 March,and the submission deadline of 29 Marchwere eligible to be presented as a Highlight talk.

The ECCB organizing committee congratulates all these dynamic young scientists for their enthusiasm, which is essential to the future of research in computational biology. In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies. Overview of variation calling from next-generation sequence data SNP calling theory and tools Short indel calling theory and tools Practical examples of variation calling File formats for variation calling and storage.

The purpose of the ECCB tutorial program is to provide participants with lectures and hands-on training, covering topics relevant to the field of bioinformatics.

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He subsequently moved to the Pathogen Genomics group at the Wellcome Trust Sanger Institute to work on sequence assembly of several pathogens such as Plasmodium falciparum strains, Trypanosoma brucei, and several other pathogen genomes.

The Semantic Web is a set of technologies, hutorial a framework, which is designed to make data integration possible via the web, with the addition of a precise semantic characterization of entities and relations ontologies. Close mobile search navigation Article navigation. Inhe co-founded the Vertebrate Resequencing Informatics group and manages the sequencing, informatics, and variation pipelines for large projects such as the genomes http: The added focus on reproducibility resulted in many authors opting to make their methods open source.

Motivation In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies. Introduction to structural variation Summary of different types of structural variants Large insertions, deletions, inversions, translocations, copy number variants Overview of algorithms and tools for calling structural variants Practical examples of calling structural variants Visualisation of structural variants.

The next-gem of problems are discussed as well as their importance for follow up studies. In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some basic tutorual checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants next-geen as SNPs, short indels, and structural variants from a reference sequence.

Flexible and tutoiral visualization of GFA sequence graphs. Introduction to short read alignment algorithms and tools Practical instructions and examples on use of short read aligners Parallelising short read alignment Introduction to sequence assembly methods and tools Practical instructions on use of short read assembly tools to get the optimal sequence assembly. Submission authors were asked to rank the ecc themes for fit of their paper.

Essentially, these efforts contribute to the success and reputation of the ECCB conference! Together, the Programme Committee PC was composed of reviewers and 35 co-reviewers. This tutorial will help people who are getting started on next-gen sequencing get an idea of the tools, flows, and uttorial that they may need to set up to handle this data.